Detailed information of SNP:
|
SNP ID:
sf0138645707(Gbrowse)
Chromosome: chr01 Position: 38645707 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 98.70% | 1.30% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 466 | 96.35% | 3.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 94.65% | 5.35% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138645707 | T->G | INTERGENIC | None |