Detailed information of SNP:
|
SNP ID:
sf0138694280(Gbrowse)
Chromosome: chr01 Position: 38694280 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 69.33% | 30.67% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 455 | 14.29% | 85.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 311 | 10.61% | 89.39% |
| Tropical Japonica | 81 | 14.81% | 85.19% |
| Japonica Intermediate | 63 | 31.75% | 68.25% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138694280 | A->T | INTERGENIC | None |