Detailed information of SNP:
|
SNP ID:
sf0138716563(Gbrowse)
Chromosome: chr01 Position: 38716563 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 57.85% | 42.15% |
| All Indica | 787 | 29.22% | 70.78% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 367 | 44.96% | 55.04% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 207 | 24.64% | 75.36% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138716563 | G->A | INTERGENIC | None |