Detailed information of SNP:
|
SNP ID:
sf0138782157(Gbrowse)
Chromosome: chr01 Position: 38782157 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 93.42% | 6.58% |
| All Indica | 743 | 89.77% | 10.23% |
| All Japonica | 490 | 98.57% | 1.43% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 359 | 93.31% | 6.69% |
| Indica II | 189 | 84.13% | 15.87% |
| Indica Intermediate | 195 | 88.72% | 11.28% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138782157 | G->A | LOC_Os01g66790(LOC_Os01g66790.1) | INTRON |