Detailed information of SNP:
|
SNP ID:
sf0138783677(Gbrowse)
Chromosome: chr01 Position: 38783677 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 97.53% | 2.47% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 457 | 92.56% | 7.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 311 | 89.07% | 10.93% |
| Tropical Japonica | 81 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138783677 | C->T | LOC_Os01g66790(LOC_Os01g66790.1) | Non-Synonymous SNP |