Detailed information of SNP:
|
SNP ID:
sf0138793785(Gbrowse)
Chromosome: chr01 Position: 38793785 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 75.35% | 24.65% |
| All Indica | 796 | 67.09% | 32.91% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 374 | 49.47% | 50.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 68.42% | 31.58% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138793785 | G->A | INTERGENIC | None |