Detailed information of SNP:
|
SNP ID:
sf0138837207(Gbrowse)
Chromosome: chr01 Position: 38837207 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1311 | 82.46% | 17.54% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 397 | 46.60% | 53.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 254 | 34.65% | 65.35% |
| Tropical Japonica | 84 | 69.05% | 30.95% |
| Japonica Intermediate | 59 | 66.10% | 33.90% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 36 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138837207 | A->G | LOC_Os01g66870(LOC_Os01g66870.1) | INTRON |