Detailed information of SNP:
|
SNP ID:
sf0138931925(Gbrowse)
Chromosome: chr01 Position: 38931925 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 66.36% | 33.64% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 496 | 6.85% | 93.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 93 | 15.05% | 84.95% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138931925 | G->A | LOC_Os01g67054(LOC_Os01g67054.2) | Synonymous |
| sf0138931925 | G->A | LOC_Os01g67054(LOC_Os01g67054.1) | Synonymous |
| sf0138931925 | G->A | LOC_Os01g67054(LOC_Os01g67054.3) | Synonymous |