Detailed information of SNP:
|
SNP ID:
sf0138998169(Gbrowse)
Chromosome: chr01 Position: 38998169 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 78.89% | 21.11% |
| All Indica | 783 | 65.13% | 34.87% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 368 | 87.23% | 12.77% |
| Indica II | 206 | 15.53% | 84.47% |
| Indica Intermediate | 209 | 75.12% | 24.88% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138998169 | G->T | LOC_Os01g67200(LOC_Os01g67200.1) | INTRON |