Detailed information of SNP:
|
SNP ID:
sf0139004512(Gbrowse)
Chromosome: chr01 Position: 39004512 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.06% | 43.94% |
| All Indica | 798 | 92.86% | 7.14% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139004512 | A->T | LOC_Os01g67220(LOC_Os01g67220.2) | INTRON |
| sf0139004512 | A->T | LOC_Os01g67220(LOC_Os01g67220.3) | INTRON |
| sf0139004512 | A->T | LOC_Os01g67220(LOC_Os01g67220.1) | INTRON |