Detailed information of SNP:
|
SNP ID:
sf0139031086(Gbrowse)
Chromosome: chr01 Position: 39031086 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 80.79% | 19.21% |
| All Indica | 792 | 67.55% | 32.45% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 209 | 18.18% | 81.82% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139031086 | C->T | LOC_Os01g67250(LOC_Os01g67250.1) | INTRON |
| sf0139031086 | C->T | LOC_Os01g67250(LOC_Os01g67250.2) | INTRON |