Detailed information of SNP:
|
SNP ID:
sf0139045767(Gbrowse)
Chromosome: chr01 Position: 39045767 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1294 | 50.54% | 49.46% |
| All Indica | 794 | 65.49% | 34.51% |
| All Japonica | 377 | 23.87% | 76.13% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 48.40% | 51.60% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 208 | 64.90% | 35.10% |
| Temperate Japonica | 250 | 20.80% | 79.20% |
| Tropical Japonica | 71 | 35.21% | 64.79% |
| Japonica Intermediate | 56 | 23.21% | 76.79% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139045767 | G->A | INTERGENIC | None |