Detailed information of SNP:
|
SNP ID:
sf0139059135(Gbrowse)
Chromosome: chr01 Position: 39059135 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 61.64% | 38.36% |
| All Indica | 793 | 39.34% | 60.66% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 60.38% | 39.62% |
| Indica II | 213 | 4.23% | 95.77% |
| Indica Intermediate | 209 | 37.80% | 62.20% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139059135 | C->T | INTERGENIC | None |