Detailed information of SNP:
|
SNP ID:
sf0139108411(Gbrowse)
Chromosome: chr01 Position: 39108411 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 97.99% | 2.01% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 472 | 94.28% | 5.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 92.45% | 7.55% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139108411 | G->A | INTERGENIC | None |