Detailed information of SNP:
|
SNP ID:
sf0139122119(Gbrowse)
Chromosome: chr01 Position: 39122119 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 80.00% | 20.00% |
| All Indica | 777 | 65.89% | 34.11% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 89.46% | 10.54% |
| Indica II | 200 | 16.50% | 83.50% |
| Indica Intermediate | 207 | 71.50% | 28.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139122119 | C->T | INTERGENIC | None |