Detailed information of SNP:



SNP ID: sf0139172550(Gbrowse)

Chromosome: chr01

Position: 39172550
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1416 64.83% 35.17%
All Indica796 98.74% 1.26%
All Japonica497 3.82% 96.18%
Aus67 100.00% 0.00%
Indica I372 98.39% 1.61%
Indica II213 99.06% 0.94%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 0.60% 99.40%
Tropical Japonica94 12.77% 87.23%
Japonica Intermediate68 7.35% 92.65%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0139172550 A->G INTERGENIC None