Detailed information of SNP:



SNP ID: sf0139201951(Gbrowse)

Chromosome: chr01

Position: 39201951
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 95.07% 4.93%
All Indica799 99.87% 0.13%
All Japonica497 86.92% 13.08%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 84.18% 15.82%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 83.82% 16.18%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0139201951 C->T INTERGENIC None