Detailed information of SNP:
|
SNP ID:
sf0139256455(Gbrowse)
Chromosome: chr01 Position: 39256455 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 80.52% | 19.48% |
| All Indica | 794 | 67.13% | 32.87% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 211 | 15.17% | 84.83% |
| Indica Intermediate | 209 | 76.56% | 23.44% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139256455 | T->A | INTERGENIC | None |