Detailed information of SNP:
|
SNP ID:
sf0139285937(Gbrowse)
Chromosome: chr01 Position: 39285937 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1175 | 95.74% | 4.26% |
| All Indica | 572 | 92.13% | 7.87% |
| All Japonica | 486 | 98.97% | 1.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 346 | 92.77% | 7.23% |
| Indica II | 57 | 98.25% | 1.75% |
| Indica Intermediate | 169 | 88.76% | 11.24% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139285937 | G->A | INTERGENIC | None |