Detailed information of SNP:
|
SNP ID:
sf0139379284(Gbrowse)
Chromosome: chr01 Position: 39379284 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1225 | 90.45% | 9.55% |
| All Indica | 658 | 86.02% | 13.98% |
| All Japonica | 489 | 99.39% | 0.61% |
| Aus | 35 | 57.14% | 42.86% |
| Indica I | 275 | 73.09% | 26.91% |
| Indica II | 203 | 97.54% | 2.46% |
| Indica Intermediate | 180 | 92.78% | 7.22% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 97.73% | 2.27% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 3 | 66.67% | 33.33% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139379284 | C->T | INTERGENIC | None |