Detailed information of SNP:



SNP ID: sf0139381188(Gbrowse)

Chromosome: chr01

Position: 39381188
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1415 71.80% 28.20%
All Indica797 96.24% 3.76%
All Japonica496 27.22% 72.78%
Aus67 98.51% 1.49%
Indica I374 96.26% 3.74%
Indica II213 99.53% 0.47%
Indica Intermediate210 92.86% 7.14%
Temperate Japonica334 14.37% 85.63%
Tropical Japonica94 77.66% 22.34%
Japonica Intermediate68 20.59% 79.41%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 85.37% 14.63%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0139381188 A->G LOC_Os01g67760(LOC_Os01g67760.1) Non-Synonymous SNP