Detailed information of SNP:
|
SNP ID:
sf0139381188(Gbrowse)
Chromosome: chr01 Position: 39381188 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 71.80% | 28.20% |
| All Indica | 797 | 96.24% | 3.76% |
| All Japonica | 496 | 27.22% | 72.78% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 334 | 14.37% | 85.63% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139381188 | A->G | LOC_Os01g67760(LOC_Os01g67760.1) | Non-Synonymous SNP |