Detailed information of SNP:
|
SNP ID:
sf0139383147(Gbrowse)
Chromosome: chr01 Position: 39383147 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 72.72% | 27.28% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 496 | 27.82% | 72.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 334 | 16.17% | 83.83% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139383147 | A->G | INTERGENIC | None |