Detailed information of SNP:
|
SNP ID:
sf0139481314(Gbrowse)
Chromosome: chr01 Position: 39481314 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 66.81% | 33.19% |
| All Indica | 793 | 95.71% | 4.29% |
| All Japonica | 494 | 14.98% | 85.02% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 91 | 34.07% | 65.93% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139481314 | T->C | INTERGENIC | None |