Detailed information of SNP:
|
SNP ID:
sf0139485771(Gbrowse)
Chromosome: chr01 Position: 39485771 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 74.84% | 25.16% |
| All Indica | 799 | 63.70% | 36.30% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 40.27% | 59.73% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139485771 | C->T | INTERGENIC | None |