Detailed information of SNP:
|
SNP ID:
sf0139574087(Gbrowse)
Chromosome: chr01 Position: 39574087 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 62.76% | 37.24% |
| All Indica | 789 | 43.22% | 56.78% |
| All Japonica | 495 | 87.68% | 12.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 49.46% | 50.54% |
| Indica II | 209 | 15.31% | 84.69% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 66 | 56.06% | 43.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139574087 | G->A | INTERGENIC | None |