Detailed information of SNP:
|
SNP ID:
sf0139608739(Gbrowse)
Chromosome: chr01 Position: 39608739 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 72.37% | 27.63% |
| All Indica | 799 | 63.33% | 36.67% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 57.07% | 42.93% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139608739 | G->C | LOC_Os01g68130(LOC_Os01g68130.1) | INTRON |