Detailed information of SNP:
|
SNP ID:
sf0139620559(Gbrowse)
Chromosome: chr01 Position: 39620559 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 82.13% | 17.87% |
| All Indica | 791 | 69.53% | 30.47% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 207 | 23.67% | 76.33% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139620559 | G->T | LOC_Os01g68160(LOC_Os01g68160.5) | INTRON |
| sf0139620559 | G->T | LOC_Os01g68160(LOC_Os01g68160.3) | INTRON |
| sf0139620559 | G->T | LOC_Os01g68160(LOC_Os01g68160.1) | INTRON |
| sf0139620559 | G->T | LOC_Os01g68160(LOC_Os01g68160.2) | INTRON |
| sf0139620559 | G->T | LOC_Os01g68160(LOC_Os01g68160.4) | INTRON |