Detailed information of SNP:
|
SNP ID:
sf0139627294(Gbrowse)
Chromosome: chr01 Position: 39627294 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.06% | 39.94% |
| All Indica | 799 | 39.05% | 60.95% |
| All Japonica | 496 | 87.70% | 12.30% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 45.07% | 54.93% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139627294 | G->A | LOC_Os01g68160(LOC_Os01g68160.5) | INTRON |
| sf0139627294 | G->A | LOC_Os01g68160(LOC_Os01g68160.3) | INTRON |
| sf0139627294 | G->A | LOC_Os01g68160(LOC_Os01g68160.1) | INTRON |
| sf0139627294 | G->A | LOC_Os01g68160(LOC_Os01g68160.2) | INTRON |
| sf0139627294 | G->A | LOC_Os01g68160(LOC_Os01g68160.4) | INTRON |