Detailed information of SNP:
|
SNP ID:
sf0139633400(Gbrowse)
Chromosome: chr01 Position: 39633400 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1291 | 98.06% | 1.94% |
| All Indica | 794 | 100.00% | 0.00% |
| All Japonica | 376 | 93.62% | 6.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 231 | 90.04% | 9.96% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 98.28% | 1.72% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139633400 | C->G | INTERGENIC | None |