Detailed information of SNP:
|
SNP ID:
sf0139655652(Gbrowse)
Chromosome: chr01 Position: 39655652 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 96.26% | 3.74% |
| All Indica | 796 | 93.34% | 6.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139655652 | G->T | LOC_Os01g68230(LOC_Os01g68230.3) | Non-Synonymous SNP |
| sf0139655652 | G->T | LOC_Os01g68230(LOC_Os01g68230.1) | UTR_3_PRIME |
| sf0139655652 | G->T | LOC_Os01g68230(LOC_Os01g68230.2) | UTR_3_PRIME |