Detailed information of SNP:
|
SNP ID:
sf0139713250(Gbrowse)
Chromosome: chr01 Position: 39713250 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 95.40% | 4.60% |
| All Indica | 754 | 92.44% | 7.56% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 356 | 93.26% | 6.74% |
| Indica II | 202 | 89.11% | 10.89% |
| Indica Intermediate | 196 | 94.39% | 5.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139713250 | G->C | LOC_Os01g68350(LOC_Os01g68350.1) | Synonymous |