Detailed information of SNP:
|
SNP ID:
sf0139761565(Gbrowse)
Chromosome: chr01 Position: 39761565 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 71.28% | 28.72% |
| All Indica | 797 | 97.99% | 2.01% |
| All Japonica | 476 | 20.80% | 79.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 332 | 2.71% | 97.29% |
| Tropical Japonica | 80 | 63.75% | 36.25% |
| Japonica Intermediate | 64 | 60.94% | 39.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139761565 | T->C | INTERGENIC | None |