Detailed information of SNP:
|
SNP ID:
sf0139780206(Gbrowse)
Chromosome: chr01 Position: 39780206 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 74.95% | 25.05% |
| All Indica | 798 | 64.41% | 35.59% |
| All Japonica | 496 | 88.31% | 11.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 212 | 12.26% | 87.74% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139780206 | G->A | LOC_Os01g68460(LOC_Os01g68460.1) | Non-Synonymous SNP |