Detailed information of SNP:
|
SNP ID:
sf0139780339(Gbrowse)
Chromosome: chr01 Position: 39780339 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 79.20% | 20.80% |
| All Indica | 795 | 98.62% | 1.38% |
| All Japonica | 438 | 39.73% | 60.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 287 | 32.40% | 67.60% |
| Tropical Japonica | 88 | 52.27% | 47.73% |
| Japonica Intermediate | 63 | 55.56% | 44.44% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139780339 | A->G | LOC_Os01g68460(LOC_Os01g68460.1) | INTRON |