Detailed information of SNP:
|
SNP ID:
sf0139782883(Gbrowse)
Chromosome: chr01 Position: 39782883 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 71.23% | 28.77% |
| All Indica | 799 | 64.21% | 35.79% |
| All Japonica | 496 | 88.10% | 11.90% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 11.74% | 88.26% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139782883 | C->T | INTERGENIC | None |