Detailed information of SNP:
|
SNP ID:
sf0139784831(Gbrowse)
Chromosome: chr01 Position: 39784831 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 75.76% | 24.24% |
| All Indica | 797 | 65.12% | 34.88% |
| All Japonica | 495 | 88.89% | 11.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 13.15% | 86.85% |
| Indica Intermediate | 209 | 72.73% | 27.27% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139784831 | G->A | INTERGENIC | None |