Detailed information of SNP:
|
SNP ID:
sf0139787062(Gbrowse)
Chromosome: chr01 Position: 39787062 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 75.42% | 24.58% |
| All Indica | 797 | 64.74% | 35.26% |
| All Japonica | 496 | 88.51% | 11.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 11.74% | 88.26% |
| Indica Intermediate | 209 | 72.25% | 27.75% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139787062 | G->A | INTERGENIC | None |