Detailed information of SNP:
|
SNP ID:
sf0139828105(Gbrowse)
Chromosome: chr01 Position: 39828105 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 63.64% | 36.36% |
| All Indica | 784 | 96.17% | 3.83% |
| All Japonica | 494 | 12.75% | 87.25% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 197 | 90.36% | 9.64% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 91 | 25.27% | 74.73% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139828105 | G->A | INTERGENIC | None |