Detailed information of SNP:
|
SNP ID:
sf0139828358(Gbrowse)
Chromosome: chr01 Position: 39828358 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 68.66% | 31.34% |
| All Indica | 797 | 62.99% | 37.01% |
| All Japonica | 451 | 76.27% | 23.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 212 | 8.49% | 91.51% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 309 | 95.15% | 4.85% |
| Tropical Japonica | 78 | 21.79% | 78.21% |
| Japonica Intermediate | 64 | 51.56% | 48.44% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139828358 | G->A | INTERGENIC | None |