Detailed information of SNP:
|
SNP ID:
sf0139830677(Gbrowse)
Chromosome: chr01 Position: 39830677 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 57.72% | 42.28% |
| All Indica | 794 | 92.07% | 7.93% |
| All Japonica | 496 | 2.62% | 97.38% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 372 | 95.43% | 4.57% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139830677 | T->C | INTERGENIC | None |