Detailed information of SNP:
|
SNP ID:
sf0139833426(Gbrowse)
Chromosome: chr01 Position: 39833426 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 73.92% | 26.08% |
| All Indica | 797 | 98.12% | 1.88% |
| All Japonica | 467 | 27.62% | 72.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 326 | 10.74% | 89.26% |
| Tropical Japonica | 74 | 74.32% | 25.68% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139833426 | A->C | INTERGENIC | None |