Detailed information of SNP:
|
SNP ID:
sf0139855850(Gbrowse)
Chromosome: chr01 Position: 39855850 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.39% | 49.61% |
| All Indica | 799 | 78.72% | 21.28% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139855850 | C->T | INTERGENIC | None |