Detailed information of SNP:
|
SNP ID:
sf0139927313(Gbrowse)
Chromosome: chr01 Position: 39927313 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 67.14% | 32.86% |
| All Indica | 798 | 92.98% | 7.02% |
| All Japonica | 489 | 18.40% | 81.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 330 | 14.55% | 85.45% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 65 | 24.62% | 75.38% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139927313 | T->G | INTERGENIC | None |