Detailed information of SNP:
|
SNP ID:
sf0139945730(Gbrowse)
Chromosome: chr01 Position: 39945730 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 90.90% | 9.10% |
| All Indica | 756 | 83.86% | 16.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 351 | 67.52% | 32.48% |
| Indica II | 201 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 96.08% | 3.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139945730 | T->C | INTERGENIC | None |