Detailed information of SNP:
|
SNP ID:
sf0139965579(Gbrowse)
Chromosome: chr01 Position: 39965579 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 99.00% | 1.00% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 474 | 97.47% | 2.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 86.67% | 13.33% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0139965579 | A->G | LOC_Os01g68810(LOC_Os01g68810.1) | Synonymous |