Detailed information of SNP:
|
SNP ID:
sf0140036991(Gbrowse)
Chromosome: chr01 Position: 40036991 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 74.70% | 25.30% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 494 | 34.21% | 65.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 332 | 12.65% | 87.35% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140036991 | A->C | INTERGENIC | None |