Detailed information of SNP:
|
SNP ID:
sf0140052386(Gbrowse)
Chromosome: chr01 Position: 40052386 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 75.59% | 24.41% |
| All Indica | 791 | 98.23% | 1.77% |
| All Japonica | 494 | 34.82% | 65.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 332 | 12.95% | 87.05% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140052386 | A->C | INTERGENIC | None |