Detailed information of SNP:
|
SNP ID:
sf0140073258(Gbrowse)
Chromosome: chr01 Position: 40073258 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 97.00% | 3.00% |
| All Indica | 722 | 94.88% | 5.12% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 327 | 94.19% | 5.81% |
| Indica II | 196 | 97.96% | 2.04% |
| Indica Intermediate | 199 | 92.96% | 7.04% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140073258 | C->T | LOC_Os01g68980(LOC_Os01g68980.1) | SNPs that introduce stop codons |