Detailed information of SNP:
|
SNP ID:
sf0140081071(Gbrowse)
Chromosome: chr01 Position: 40081071 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.17% | 43.83% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140081071 | T->C | LOC_Os01g68990(LOC_Os01g68990.1) | INTRON |