Detailed information of SNP:
|
SNP ID:
sf0140116166(Gbrowse)
Chromosome: chr01 Position: 40116166 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1361 | 81.78% | 18.22% |
| All Indica | 746 | 67.69% | 32.31% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 349 | 46.99% | 53.01% |
| Indica II | 195 | 88.72% | 11.28% |
| Indica Intermediate | 202 | 83.17% | 16.83% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140116166 | A->G | LOC_Os01g69040(LOC_Os01g69040.2) | INTRON |
| sf0140116166 | A->G | LOC_Os01g69040(LOC_Os01g69040.1) | INTRON |